IL_7PHC_022

3D structure

PDB id

7PHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GAAAC*GUGAUAGC

Length

13 nucleotides

Bulged bases

7PHC|1|3|G|836, 7PHC|1|3|G|840

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PHC_022 not in the Motif Atlas

Geometric match to IL_5TBW_028

Geometric discrepancy: 0.3525

The information below is about IL_5TBW_028

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.7

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7PHC|1|3|G|709
7PHC|1|3|A|710
7PHC|1|3|A|711
7PHC|1|3|A|712
7PHC|1|3|C|713
*
7PHC|1|3|G|834
7PHC|1|3|U|835
7PHC|1|3|G|836
7PHC|1|3|A|837
7PHC|1|3|U|838
7PHC|1|3|A|839
7PHC|1|3|G|840
7PHC|1|3|C|841

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L4

Chain k

50S ribosomal protein L15