IL_7PIR_034

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CUAAGUG*CUAAG

Length

12 nucleotides

Bulged bases

7PIR|1|3|A|1178

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_034 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.261

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

7PIR|1|3|C|1053
7PIR|1|3|U|1054
7PIR|1|3|A|1055
7PIR|1|3|A|1056
7PIR|1|3|G|1057
7PIR|1|3|U|1058
7PIR|1|3|G|1059
*
7PIR|1|3|C|1175
7PIR|1|3|U|1176
7PIR|1|3|A|1177
7PIR|1|3|A|1178
7PIR|1|3|G|1179

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L36

Chain e

50S ribosomal protein L6

Chain i

50S ribosomal protein L13