IL_7PIR_042

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

AGUUGAAG*UGGAU

Length

13 nucleotides

Bulged bases

7PIR|1|3|U|1241

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_042 not in the Motif Atlas

Geometric match to IL_3U4M_004

Geometric discrepancy: 0.2744

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

7PIR|1|3|A|1238
7PIR|1|3|G|1239
7PIR|1|3|U|1240
7PIR|1|3|U|1241
7PIR|1|3|G|1242
7PIR|1|3|A|1243
7PIR|1|3|A|1244
7PIR|1|3|G|1245
*
7PIR|1|3|U|1264
7PIR|1|3|G|1265
7PIR|1|3|G|1266
7PIR|1|3|A|1267
7PIR|1|3|U|1268

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain p

50S ribosomal protein L20

Chain r

50S ribosomal protein L22