IL_7PIR_045

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

ACCAG*CUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_045 not in the Motif Atlas

Homologous match to IL_8VTW_050

Geometric discrepancy: 0.5522

The information below is about IL_8VTW_050

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_04395.1

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

3

Unit IDs

7PIR|1|3|A|1347
7PIR|1|3|C|1348
7PIR|1|3|C|1349
7PIR|1|3|A|1350
7PIR|1|3|G|1351
*
7PIR|1|3|C|1359
7PIR|1|3|U|1360
7PIR|1|3|U|1361

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain r

50S ribosomal protein L22