IL_7PIR_144
3D structure
- PDB id
- 7PIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 12.1 Å
Loop
- Sequence
- UGGAG*CGUAGAUA
- Length
- 13 nucleotides
- Bulged bases
- 7PIR|1|5|A|699
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7PIR_144 not in the Motif Atlas
- Homologous match to IL_5J7L_035
- Geometric discrepancy: 0.4301
- The information below is about IL_5J7L_035
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_01488.3
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
7PIR|1|5|U|681
7PIR|1|5|G|682
7PIR|1|5|G|683
7PIR|1|5|A|684
7PIR|1|5|G|685
*
7PIR|1|5|C|696
7PIR|1|5|G|697
7PIR|1|5|U|698
7PIR|1|5|A|699
7PIR|1|5|G|700
7PIR|1|5|A|701
7PIR|1|5|U|702
7PIR|1|5|A|703
Current chains
- Chain 5
- 16S ribosomal RNA
Nearby chains
- Chain 3
- Large subunit ribosomal RNA; LSU rRNA
- Chain J
- 30S ribosomal protein S11
- Chain a
- 50S ribosomal protein L2
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