IL_7PIR_198

3D structure

PDB id

7PIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

AUAC*GUAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PIR_198 not in the Motif Atlas

Geometric match to IL_5C5W_001

Geometric discrepancy: 0.2979

The information below is about IL_5C5W_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7PIR|1|5|A|820
7PIR|1|5|U|821
7PIR|1|5|A|822
7PIR|1|5|C|823
*
7PIR|1|5|G|868
7PIR|1|5|U|869
7PIR|1|5|A|870
7PIR|1|5|U|871

Current chains

Chain 5

16S ribosomal RNA

Nearby chains

Chain G

30S ribosomal protein S8