IL_7PWO_033

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGC*GGUG

Length

7 nucleotides

Bulged bases

7PWO|1|1|G|1116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_033 not in the Motif Atlas

Homologous match to IL_5TBW_057

Geometric discrepancy: 0.0926

The information below is about IL_5TBW_057

Detailed Annotation

Isolated cWS basepair

Broad Annotation

Isolated cWS basepair

Motif group

IL_73554.3

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

10

Unit IDs

7PWO|1|1|C|1062
7PWO|1|1|G|1063
7PWO|1|1|C|1064
*
7PWO|1|1|G|1115
7PWO|1|1|G|1116
7PWO|1|1|U|1117
7PWO|1|1|G|1118

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain C2

Ribosomal protein L4

Chain a2

Ribosomal protein L27a

Chain e2

Ribosomal protein L32