IL_7PWO_040
3D structure
- PDB id
- 7PWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- CUAAG*CGAACG
- Length
- 11 nucleotides
- Bulged bases
- 7PWO|1|1|A|1260, 7PWO|1|1|C|1261
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7PWO_040 not in the Motif Atlas
- Homologous match to IL_5TBW_063
- Geometric discrepancy: 0.0885
- The information below is about IL_5TBW_063
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
7PWO|1|1|C|1215
7PWO|1|1|U|1216
7PWO|1|1|A|1217
7PWO|1|1|A|1218
7PWO|1|1|G|1219
*
7PWO|1|1|C|1257
7PWO|1|1|G|1258
7PWO|1|1|A|1259
7PWO|1|1|A|1260
7PWO|1|1|C|1261
7PWO|1|1|G|1262
Current chains
- Chain 1
- rRNA 28S
Nearby chains
- Chain 42
- rRNA 5.8S
- Chain A2
- Ribosomal protein L2
- Chain g2
- Ribosomal protein L34
- Chain j2
- Ribosomal protein L37
- Chain l2
- Ribosomal protein L39
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