IL_7PWO_043

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GCAC*GGCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_043 not in the Motif Atlas

Geometric match to IL_4V88_430

Geometric discrepancy: 0.2154

The information below is about IL_4V88_430

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7PWO|1|1|G|1325
7PWO|1|1|C|1326
7PWO|1|1|A|1327
7PWO|1|1|C|1328
*
7PWO|1|1|G|1428
7PWO|1|1|G|1429
7PWO|1|1|C|1430
7PWO|1|1|C|1431

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain R2

Ribosomal protein L19

Chain g2

Ribosomal protein L34

Chain p2

Ribosomal protein L37a