IL_7PWO_107

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CAUCAC*GCCCGACG

Length

14 nucleotides

Bulged bases

7PWO|1|2|U|227, 7PWO|1|2|C|263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_107 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.1321

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

7PWO|1|2|C|225
7PWO|1|2|A|226
7PWO|1|2|U|227
7PWO|1|2|C|228
7PWO|1|2|A|229
7PWO|1|2|C|230
*
7PWO|1|2|G|260
7PWO|1|2|C|261
7PWO|1|2|C|262
7PWO|1|2|C|263
7PWO|1|2|G|264
7PWO|1|2|A|265
7PWO|1|2|C|266
7PWO|1|2|G|267

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain I1

40S ribosomal protein S8

Chain L1

SSU ribosomal protein S17P

Chain X1

Ribosomal protein S23