IL_7PWO_114

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

7PWO|1|2|U|459, 7PWO|1|2|A|460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_114 not in the Motif Atlas

Homologous match to IL_8C3A_425

Geometric discrepancy: 0.2518

The information below is about IL_8C3A_425

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.2

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7PWO|1|2|G|443
7PWO|1|2|U|444
7PWO|1|2|G|445
7PWO|1|2|C|446
7PWO|1|2|C|447
7PWO|1|2|A|448
7PWO|1|2|G|449
*
7PWO|1|2|C|456
7PWO|1|2|G|457
7PWO|1|2|G|458
7PWO|1|2|U|459
7PWO|1|2|A|460
7PWO|1|2|A|461
7PWO|1|2|U|462
7PWO|1|2|U|463
7PWO|1|2|C|464

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain D1

Ribosomal protein S3

Chain X1

Ribosomal protein S23

Chain e1

40S ribosomal protein S30