IL_7PWO_115

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GUUGAAA*UC

Length

9 nucleotides

Bulged bases

7PWO|1|2|G|500

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_115 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.1417

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

7PWO|1|2|G|497
7PWO|1|2|U|498
7PWO|1|2|U|499
7PWO|1|2|G|500
7PWO|1|2|A|501
7PWO|1|2|A|502
7PWO|1|2|A|503
*
7PWO|1|2|U|846
7PWO|1|2|C|847

Current chains

Chain 2

rRNA 18S

Nearby chains

Chain X1

Ribosomal protein S23

Chain a1

40S ribosomal protein S26