IL_7PWO_116
3D structure
- PDB id
- 7PWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7PWO_116 not in the Motif Atlas
- Homologous match to IL_4V88_418
- Geometric discrepancy: 0.0832
- The information below is about IL_4V88_418
- Detailed Annotation
- tSH-tWH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
7PWO|1|2|C|508
7PWO|1|2|G|509
7PWO|1|2|U|510
7PWO|1|2|A|511
7PWO|1|2|G|512
*
7PWO|1|2|U|720
7PWO|1|2|C|721
7PWO|1|2|A|722
7PWO|1|2|A|723
7PWO|1|2|G|724
Current chains
- Chain 2
- rRNA 18S
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain L1
- SSU ribosomal protein S17P
- Chain N1
- Ribosomal protein S13
- Chain W1
- Ribosomal protein S15A
- Chain X1
- Ribosomal protein S23
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