IL_7PWO_189
3D structure
- PDB id
- 7PWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 7PWO|1|2|C|1014, 7PWO|1|2|U|1136, 7PWO|1|2|G|1139
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7PWO_189 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.1901
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7PWO|1|2|U|1012
7PWO|1|2|G|1013
7PWO|1|2|C|1014
7PWO|1|2|A|1015
7PWO|1|2|U|1016
7PWO|1|2|G|1017
7PWO|1|2|G|1018
*
7PWO|1|2|U|1134
7PWO|1|2|C|1135
7PWO|1|2|U|1136
7PWO|1|2|G|1137
7PWO|1|2|U|1138
7PWO|1|2|G|1139
7PWO|1|2|A|1140
7PWO|1|2|U|1141
7PWO|1|2|G|1142
Current chains
- Chain 2
- rRNA 18S
Nearby chains
- Chain D1
- Ribosomal protein S3
- Chain K1
- Ribosomal protein S10B
- Chain U1
- Ribosomal protein S20
- Chain d1
- Ribosomal protein S29A
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