IL_7Q08_056

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

UCUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

7Q08|1|1|A|1217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q08_056 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.2015

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

7Q08|1|1|U|1214
7Q08|1|1|C|1215
7Q08|1|1|U|1216
7Q08|1|1|A|1217
7Q08|1|1|G|1218
7Q08|1|1|A|1219
7Q08|1|1|C|1220
7Q08|1|1|A|1221
7Q08|1|1|G|1222
*
7Q08|1|1|C|1279
7Q08|1|1|C|1280
7Q08|1|1|G|1281
7Q08|1|1|A|1282
7Q08|1|1|A|1283

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 0

60S ribosomal protein L20

Chain AN

Rpl40bp