IL_7Q08_091

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

UGAUGG*UGUUGACA

Length

14 nucleotides

Bulged bases

7Q08|1|1|U|2137, 7Q08|1|1|U|2153, 7Q08|1|1|C|2157

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q08_091 not in the Motif Atlas

Homologous match to IL_8C3A_088

Geometric discrepancy: 0.0666

The information below is about IL_8C3A_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

7Q08|1|1|U|2134
7Q08|1|1|G|2135
7Q08|1|1|A|2136
7Q08|1|1|U|2137
7Q08|1|1|G|2138
7Q08|1|1|G|2139
*
7Q08|1|1|U|2151
7Q08|1|1|G|2152
7Q08|1|1|U|2153
7Q08|1|1|U|2154
7Q08|1|1|G|2155
7Q08|1|1|A|2156
7Q08|1|1|C|2157
7Q08|1|1|A|2158

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain AQ

Ribosomal 60S subunit protein L43A

Chain j

Ribosomal 60S subunit protein L2A