IL_7Q08_121

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

7Q08|1|1|A|3114, 7Q08|1|1|C|3115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q08_121 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.0805

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7Q08|1|1|C|2976
7Q08|1|1|A|2977
7Q08|1|1|A|2978
7Q08|1|1|U|2979
*
7Q08|1|1|A|3111
7Q08|1|1|G|3112
7Q08|1|1|A|3113
7Q08|1|1|A|3114
7Q08|1|1|C|3115
7Q08|1|1|G|3116

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain k

Ribosomal 60S subunit protein L3

Chain w

Ribosomal 60S subunit protein L16A