3D structure

PDB id
7Q08 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Candida albicans 80S ribosome in complex with cycloheximide
Experimental method
ELECTRON MICROSCOPY
Resolution
2.56 Å

Loop

Sequence
CUUAGUAC*GGAACCG
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7Q08_123 not in the Motif Atlas
Homologous match to IL_8C3A_125
Geometric discrepancy: 0.0565
The information below is about IL_8C3A_125
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.8
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

7Q08|1|1|C|2990
7Q08|1|1|U|2991
7Q08|1|1|U|2992
7Q08|1|1|A|2993
7Q08|1|1|G|2994
7Q08|1|1|U|2995
7Q08|1|1|A|2996
7Q08|1|1|C|2997
*
7Q08|1|1|G|3002
7Q08|1|1|G|3003
7Q08|1|1|A|3004
7Q08|1|1|A|3005
7Q08|1|1|C|3006
7Q08|1|1|C|3007
7Q08|1|1|G|3008

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain 6
Ribosomal 60S subunit protein L23B
Chain AN
Rpl40bp
Chain k
Ribosomal 60S subunit protein L3
Chain q
Ribosomal 60S subunit protein L9B

Coloring options:


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