IL_7Q08_125

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

7Q08|1|1|U|3028, 7Q08|1|1|U|3030

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q08_125 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.0846

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

7Q08|1|1|U|3026
7Q08|1|1|U|3027
7Q08|1|1|U|3028
7Q08|1|1|U|3029
7Q08|1|1|U|3030
7Q08|1|1|G|3031
*
7Q08|1|1|C|3056
7Q08|1|1|G|3057
7Q08|1|1|A|3058
7Q08|1|1|A|3059
7Q08|1|1|G|3060

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 7

Ribosomal 60S subunit protein L24A

Chain AE

Ribosomal 60S subunit protein L31B

Chain k

Ribosomal 60S subunit protein L3