IL_7Q08_184

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

7Q08|1|A|A|617

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q08_184 not in the Motif Atlas

Geometric match to IL_4V88_416

Geometric discrepancy: 0.126

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

7Q08|1|A|G|614
7Q08|1|A|U|615
7Q08|1|A|U|616
7Q08|1|A|A|617
7Q08|1|A|A|618
7Q08|1|A|A|619
7Q08|1|A|A|620
*
7Q08|1|A|U|1089
7Q08|1|A|C|1090

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain Y

Ribosomal 40S subunit protein S23B

Chain b

40S ribosomal protein S26