IL_7Q08_194

3D structure

PDB id

7Q08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cycloheximide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

7Q08|1|A|G|861

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q08_194 not in the Motif Atlas

Geometric match to IL_4V88_431

Geometric discrepancy: 0.0842

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7Q08|1|A|C|859
7Q08|1|A|G|860
7Q08|1|A|G|861
7Q08|1|A|G|862
7Q08|1|A|G|863
*
7Q08|1|A|C|935
7Q08|1|A|A|936
7Q08|1|A|A|937
7Q08|1|A|G|938

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S1

Chain O

Ribosomal 40S subunit protein S13

Chain b

40S ribosomal protein S26