IL_7QCA_010

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CAUA*UGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_010 not in the Motif Atlas

Geometric match to IL_1D4R_003

Geometric discrepancy: 0.2556

The information below is about IL_1D4R_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

7QCA|1|L50|C|484
7QCA|1|L50|A|485
7QCA|1|L50|U|486
7QCA|1|L50|A|487
*
7QCA|1|L50|U|543
7QCA|1|L50|G|544
7QCA|1|L50|A|545
7QCA|1|L50|G|546

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LAA

uL15 LAA

Chain LC0

60S ribosomal protein L4

Chain LL0

60S ribosomal protein L13

Chain LN0

Ribosomal protein L15

Chain LQ0

60S ribosomal protein L18