IL_7QCA_013
3D structure
- PDB id
- 7QCA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Spraguea lophii ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- GAUAG*CUAGUUGC
- Length
- 13 nucleotides
- Bulged bases
- 7QCA|1|L50|A|684, 7QCA|1|L50|G|688
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QCA_013 not in the Motif Atlas
- Geometric match to IL_5TBW_028
- Geometric discrepancy: 0.1385
- The information below is about IL_5TBW_028
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
7QCA|1|L50|G|555
7QCA|1|L50|A|556
7QCA|1|L50|U|557
7QCA|1|L50|A|558
7QCA|1|L50|G|559
*
7QCA|1|L50|C|682
7QCA|1|L50|U|683
7QCA|1|L50|A|684
7QCA|1|L50|G|685
7QCA|1|L50|U|686
7QCA|1|L50|U|687
7QCA|1|L50|G|688
7QCA|1|L50|C|689
Current chains
- Chain L50
- RNA 23S
Nearby chains
- Chain LAA
- uL15 LAA
- Chain LC0
- 60S ribosomal protein L4
- Chain LJJ
- eL37 LJJ
- Chain LL0
- 60S ribosomal protein L13
- Chain LN0
- Ribosomal protein L15
Coloring options: