IL_7QCA_025
3D structure
- PDB id
- 7QCA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Spraguea lophii ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- AAGGUAG*CGAAUGU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QCA_025 not in the Motif Atlas
- Homologous match to IL_5TBW_038
- Geometric discrepancy: 0.1215
- The information below is about IL_5TBW_038
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93830.3
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
7QCA|1|L50|A|739
7QCA|1|L50|A|740
7QCA|1|L50|G|741
7QCA|1|L50|G|742
7QCA|1|L50|U|743
7QCA|1|L50|A|744
7QCA|1|L50|G|745
*
7QCA|1|L50|C|783
7QCA|1|L50|G|784
7QCA|1|L50|A|785
7QCA|1|L50|A|786
7QCA|1|L50|U|787
7QCA|1|L50|G|788
7QCA|1|L50|U|789
Current chains
- Chain L50
- RNA 23S
Nearby chains
- Chain L70
- 5S ribosomal RNA; 5S rRNA
- Chain LF0
- 60S ribosomal protein L7
- Chain LI0
- S60 ribosomal protein L10
- Chain LT0
- 60s ribosomal protein L21
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