IL_7QCA_032
3D structure
- PDB id
- 7QCA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Spraguea lophii ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- AACCCAAU*AU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QCA_032 not in the Motif Atlas
- Homologous match to IL_8C3A_052
- Geometric discrepancy: 0.2228
- The information below is about IL_8C3A_052
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_84902.1
- Basepair signature
- cWW-L-cWW-L-L-R-cHH
- Number of instances in this motif group
- 2
Unit IDs
7QCA|1|L50|A|872
7QCA|1|L50|A|873
7QCA|1|L50|C|874
7QCA|1|L50|C|875
7QCA|1|L50|C|876
7QCA|1|L50|A|877
7QCA|1|L50|A|878
7QCA|1|L50|U|879
*
7QCA|1|L50|A|1017
7QCA|1|L50|U|1018
Current chains
- Chain L50
- RNA 23S
Nearby chains
- Chain LF0
- 60S ribosomal protein L7
- Chain LFF
- 60S ribosomal protein L35a
- Chain LO0
- Ribosomal protein L13A
- Chain LS0
- 60S ribosomal protein L20
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