IL_7QCA_036

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CGU*AGAG

Length

7 nucleotides

Bulged bases

7QCA|1|L50|G|1097

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_036 not in the Motif Atlas

Homologous match to IL_5TBW_057

Geometric discrepancy: 0.1458

The information below is about IL_5TBW_057

Detailed Annotation

Isolated cWS basepair

Broad Annotation

Isolated cWS basepair

Motif group

IL_73554.3

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

10

Unit IDs

7QCA|1|L50|C|1046
7QCA|1|L50|G|1047
7QCA|1|L50|U|1048
*
7QCA|1|L50|A|1096
7QCA|1|L50|G|1097
7QCA|1|L50|A|1098
7QCA|1|L50|G|1099

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LAA

uL15 LAA

Chain LC0

60S ribosomal protein L4

Chain LEE

60S ribosomal protein L32