IL_7QCA_039

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GUAGUAG*CGAACC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_039 not in the Motif Atlas

Homologous match to IL_5TBW_061

Geometric discrepancy: 0.1444

The information below is about IL_5TBW_061

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7QCA|1|L50|G|1112
7QCA|1|L50|U|1113
7QCA|1|L50|A|1114
7QCA|1|L50|G|1115
7QCA|1|L50|U|1116
7QCA|1|L50|A|1117
7QCA|1|L50|G|1118
*
7QCA|1|L50|C|1790
7QCA|1|L50|G|1791
7QCA|1|L50|A|1792
7QCA|1|L50|A|1793
7QCA|1|L50|C|1794
7QCA|1|L50|C|1795

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LC0

60S ribosomal protein L4

Chain LP0

60S ribosomal protein L17