IL_7QCA_048
3D structure
- PDB id
- 7QCA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Spraguea lophii ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- CUGAGAC*GGCGACG
- Length
- 14 nucleotides
- Bulged bases
- 7QCA|1|L50|A|1342, 7QCA|1|L50|C|1355
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QCA_048 not in the Motif Atlas
- Homologous match to IL_5TBW_073
- Geometric discrepancy: 0.416
- The information below is about IL_5TBW_073
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
7QCA|1|L50|C|1337
7QCA|1|L50|U|1338
7QCA|1|L50|G|1339
7QCA|1|L50|A|1340
7QCA|1|L50|G|1341
7QCA|1|L50|A|1342
7QCA|1|L50|C|1343
*
7QCA|1|L50|G|1353
7QCA|1|L50|G|1354
7QCA|1|L50|C|1355
7QCA|1|L50|G|1356
7QCA|1|L50|A|1357
7QCA|1|L50|C|1358
7QCA|1|L50|G|1359
Current chains
- Chain L50
- RNA 23S
Nearby chains
- Chain LCC
- 60S ribosomal protein L3
- Chain LGG
- Ribosomal protein L34
- Chain LPP
- 60S ribosomal protein L37a
- Chain LR0
- 60S ribosomal protein L19
- Chain LZ0
- 60S ribosomal protein L27
- Chain SN0
- 40S ribosomal protein S13
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