IL_7QG8_035

3D structure

PDB id

7QG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the collided E. coli disome - VemP-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.97 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

7QG8|1|0|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QG8_035 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.0963

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

7QG8|1|0|U|684
7QG8|1|0|G|685
7QG8|1|0|U|686
7QG8|1|0|A|687
7QG8|1|0|G|688
*
7QG8|1|0|C|699
7QG8|1|0|G|700
7QG8|1|0|U|701
7QG8|1|0|A|702
7QG8|1|0|G|703
7QG8|1|0|A|704
7QG8|1|0|G|705
7QG8|1|0|A|706

Current chains

Chain 0

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S11

Chain N

Large subunit ribosomal RNA; LSU rRNA