IL_7QGR_035

3D structure

PDB id

7QGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

7QGR|1|0|A|702

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QGR_035 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.0963

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

7QGR|1|0|U|684
7QGR|1|0|G|685
7QGR|1|0|U|686
7QGR|1|0|A|687
7QGR|1|0|G|688
*
7QGR|1|0|C|699
7QGR|1|0|G|700
7QGR|1|0|U|701
7QGR|1|0|A|702
7QGR|1|0|G|703
7QGR|1|0|A|704
7QGR|1|0|G|705
7QGR|1|0|A|706

Current chains

Chain 0

16S rRNA

Nearby chains

Chain A

30S ribosomal protein S11

Chain N

Large subunit ribosomal RNA; LSU rRNA