IL_7QGR_105

3D structure

PDB id

7QGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CCCAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

7QGR|1|N|A|1046

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QGR_105 not in the Motif Atlas

Geometric match to IL_5TBW_054

Geometric discrepancy: 0.1665

The information below is about IL_5TBW_054

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

7QGR|1|N|C|1043
7QGR|1|N|C|1044
7QGR|1|N|C|1045
7QGR|1|N|A|1046
7QGR|1|N|G|1047
7QGR|1|N|A|1048
7QGR|1|N|C|1049
7QGR|1|N|A|1050
7QGR|1|N|G|1051
*
7QGR|1|N|U|1108
7QGR|1|N|C|1109
7QGR|1|N|G|1110
7QGR|1|N|A|1111
7QGR|1|N|G|1112

Current chains

Chain N

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L6