IL_7QGU_139

3D structure

PDB id

7QGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the B. subtilis disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.75 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

7QGU|1|W|A|541, 7QGU|1|W|U|543

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QGU_139 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1503

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7QGU|1|W|G|524
7QGU|1|W|U|525
7QGU|1|W|G|526
7QGU|1|W|C|527
7QGU|1|W|C|528
7QGU|1|W|A|529
7QGU|1|W|G|530
*
7QGU|1|W|C|537
7QGU|1|W|G|538
7QGU|1|W|G|539
7QGU|1|W|U|540
7QGU|1|W|A|541
7QGU|1|W|A|542
7QGU|1|W|U|543
7QGU|1|W|A|544
7QGU|1|W|C|545

Current chains

Chain W

16S rRNA

Nearby chains

Chain h

30S ribosomal protein S3

Chain q

30S ribosomal protein S12