IL_7QIW_054
3D structure
- PDB id
- 7QIW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.35 Å
Loop
- Sequence
- UGCCAAAC*GA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIW_054 not in the Motif Atlas
- Homologous match to IL_8C3A_052
- Geometric discrepancy: 0.1339
- The information below is about IL_8C3A_052
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_84902.1
- Basepair signature
- cWW-L-cWW-L-L-R-cHH
- Number of instances in this motif group
- 2
Unit IDs
7QIW|1|2|U|1184
7QIW|1|2|G|1185
7QIW|1|2|C|1186
7QIW|1|2|C|1187
7QIW|1|2|A|1188
7QIW|1|2|A|1189
7QIW|1|2|A|1190
7QIW|1|2|C|1191
*
7QIW|1|2|G|1337
7QIW|1|2|A|1338
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain I
- Thaliana 60S ribosomal protein L7
- Chain Q
- 60S ribosomal protein uL13
- Chain U
- 60S ribosomal protein L18a
- Chain h
- 60S ribosomal protein eL33
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