IL_7QIW_056
3D structure
- PDB id
- 7QIW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.35 Å
Loop
- Sequence
- CUAACCUAG*CUUAAG
- Length
- 15 nucleotides
- Bulged bases
- 7QIW|1|2|C|1202, 7QIW|1|2|C|1203, 7QIW|1|2|U|1204, 7QIW|1|2|U|1328, 7QIW|1|2|A|1330
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIW_056 not in the Motif Atlas
- Homologous match to IL_8C3A_054
- Geometric discrepancy: 0.1517
- The information below is about IL_8C3A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7QIW|1|2|C|1198
7QIW|1|2|U|1199
7QIW|1|2|A|1200
7QIW|1|2|A|1201
7QIW|1|2|C|1202
7QIW|1|2|C|1203
7QIW|1|2|U|1204
7QIW|1|2|A|1205
7QIW|1|2|G|1206
*
7QIW|1|2|C|1326
7QIW|1|2|U|1327
7QIW|1|2|U|1328
7QIW|1|2|A|1329
7QIW|1|2|A|1330
7QIW|1|2|G|1331
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain K
- 60S ribosomal protein uL6
- Chain O
- Ribosomal_L14e domain-containing protein
- Chain Q
- 60S ribosomal protein uL13
- Chain U
- 60S ribosomal protein L18a
- Chain o
- Ubiquitin-like domain-containing protein
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