IL_7QIW_139
3D structure
- PDB id
- 7QIW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.35 Å
Loop
- Sequence
- CAAU*AGAAG
- Length
- 9 nucleotides
- Bulged bases
- 7QIW|1|2|A|3145
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIW_139 not in the Motif Atlas
- Homologous match to IL_8C3A_123
- Geometric discrepancy: 0.1606
- The information below is about IL_8C3A_123
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
7QIW|1|2|C|3007
7QIW|1|2|A|3008
7QIW|1|2|A|3009
7QIW|1|2|U|3010
*
7QIW|1|2|A|3142
7QIW|1|2|G|3143
7QIW|1|2|A|3144
7QIW|1|2|A|3145
7QIW|1|2|G|3146
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain E
- Ribosomal protein L3
- Chain Q
- 60S ribosomal protein uL13
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