IL_7QIW_143

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CCAUCG*CGAAG

Length

11 nucleotides

Bulged bases

7QIW|1|2|A|3059, 7QIW|1|2|C|3061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIW_143 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.1553

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

7QIW|1|2|C|3057
7QIW|1|2|C|3058
7QIW|1|2|A|3059
7QIW|1|2|U|3060
7QIW|1|2|C|3061
7QIW|1|2|G|3062
*
7QIW|1|2|C|3087
7QIW|1|2|G|3088
7QIW|1|2|A|3089
7QIW|1|2|A|3090
7QIW|1|2|G|3091

Current chains

Chain 2

25S rRNA

Nearby chains

Chain E

Ribosomal protein L3

Chain Y

TRASH domain-containing protein

Chain f

60S ribosomal protein eL31