IL_7QIW_153

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GUA*UUCAGC

Length

9 nucleotides

Bulged bases

7QIW|1|2|G|3370

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIW_153 not in the Motif Atlas

Homologous match to IL_8C3A_138

Geometric discrepancy: 0.1486

The information below is about IL_8C3A_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7QIW|1|2|G|3321
7QIW|1|2|U|3322
7QIW|1|2|A|3323
*
7QIW|1|2|U|3366
7QIW|1|2|U|3367
7QIW|1|2|C|3368
7QIW|1|2|A|3369
7QIW|1|2|G|3370
7QIW|1|2|C|3371

Current chains

Chain 2

25S rRNA

Nearby chains

Chain E

Ribosomal protein L3

Chain f

60S ribosomal protein eL31