IL_7QIZ_095

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CGAUGG*UGUUUACG

Length

14 nucleotides

Bulged bases

7QIZ|1|2|U|2163, 7QIZ|1|2|U|2178, 7QIZ|1|2|C|2182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_095 not in the Motif Atlas

Homologous match to IL_8C3A_088

Geometric discrepancy: 0.103

The information below is about IL_8C3A_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

7QIZ|1|2|C|2160
7QIZ|1|2|G|2161
7QIZ|1|2|A|2162
7QIZ|1|2|U|2163
7QIZ|1|2|G|2164
7QIZ|1|2|G|2165
*
7QIZ|1|2|U|2176
7QIZ|1|2|G|2177
7QIZ|1|2|U|2178
7QIZ|1|2|U|2179
7QIZ|1|2|U|2180
7QIZ|1|2|A|2181
7QIZ|1|2|C|2182
7QIZ|1|2|G|2183

Current chains

Chain 2

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L8

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain q

60S ribosomal protein eL43