IL_7QIZ_139

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CAAU*AGAAG

Length

9 nucleotides

Bulged bases

7QIZ|1|2|A|3145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_139 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.1593

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7QIZ|1|2|C|3007
7QIZ|1|2|A|3008
7QIZ|1|2|A|3009
7QIZ|1|2|U|3010
*
7QIZ|1|2|A|3142
7QIZ|1|2|G|3143
7QIZ|1|2|A|3144
7QIZ|1|2|A|3145
7QIZ|1|2|G|3146

Current chains

Chain 2

25S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain E

Ribosomal protein L3

Chain Q

Pectinesterase