IL_7QIZ_141
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CCUAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIZ_141 not in the Motif Atlas
- Homologous match to IL_8C3A_125
- Geometric discrepancy: 0.0954
- The information below is about IL_8C3A_125
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
7QIZ|1|2|C|3021
7QIZ|1|2|C|3022
7QIZ|1|2|U|3023
7QIZ|1|2|A|3024
7QIZ|1|2|G|3025
7QIZ|1|2|U|3026
7QIZ|1|2|A|3027
7QIZ|1|2|C|3028
*
7QIZ|1|2|G|3033
7QIZ|1|2|G|3034
7QIZ|1|2|A|3035
7QIZ|1|2|A|3036
7QIZ|1|2|C|3037
7QIZ|1|2|C|3038
7QIZ|1|2|G|3039
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain E
- Ribosomal protein L3
- Chain K
- 60S ribosomal protein uL6
- Chain X
- 60S ribosomal protein uL14
- Chain o
- Ubiquitin
Coloring options: