IL_7QIZ_142

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CAAUU*ACCG

Length

9 nucleotides

Bulged bases

7QIZ|1|2|C|3095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_142 not in the Motif Atlas

Homologous match to IL_8C3A_126

Geometric discrepancy: 0.1481

The information below is about IL_8C3A_126

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

Major groove minor groove platform with tHH

Motif group

IL_14592.1

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

7QIZ|1|2|C|3050
7QIZ|1|2|A|3051
7QIZ|1|2|A|3052
7QIZ|1|2|U|3053
7QIZ|1|2|U|3054
*
7QIZ|1|2|A|3094
7QIZ|1|2|C|3095
7QIZ|1|2|C|3096
7QIZ|1|2|G|3097

Current chains

Chain 2

25S rRNA

Nearby chains

Chain E

Ribosomal protein L3

Chain X

60S ribosomal protein uL14

Chain Y

TRASH domain-containing protein