IL_7QIZ_153

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GUA*UUCAGC

Length

9 nucleotides

Bulged bases

7QIZ|1|2|G|3370

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_153 not in the Motif Atlas

Homologous match to IL_8C3A_138

Geometric discrepancy: 0.1481

The information below is about IL_8C3A_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7QIZ|1|2|G|3321
7QIZ|1|2|U|3322
7QIZ|1|2|A|3323
*
7QIZ|1|2|U|3366
7QIZ|1|2|U|3367
7QIZ|1|2|C|3368
7QIZ|1|2|A|3369
7QIZ|1|2|G|3370
7QIZ|1|2|C|3371

Current chains

Chain 2

25S rRNA

Nearby chains

Chain E

Ribosomal protein L3

Chain f

60S ribosomal protein eL31