IL_7QIZ_178

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UAGU*AA

Length

6 nucleotides

Bulged bases

7QIZ|1|S2|A|115, 7QIZ|1|S2|G|116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_178 not in the Motif Atlas

Geometric match to IL_4V88_392

Geometric discrepancy: 0.1198

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

7QIZ|1|S2|U|114
7QIZ|1|S2|A|115
7QIZ|1|S2|G|116
7QIZ|1|S2|U|117
*
7QIZ|1|S2|A|304
7QIZ|1|S2|A|305

Current chains

Chain S2

18S

Nearby chains

Chain w

40S ribosomal protein S4

Chain y

40S ribosomal protein S8

Chain z

Ribosomal_S17_N domain-containing protein