IL_7QIZ_188
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- UAUCAA*UGGUGACG
- Length
- 14 nucleotides
- Bulged bases
- 7QIZ|1|S2|U|317, 7QIZ|1|S2|U|355
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIZ_188 not in the Motif Atlas
- Geometric match to IL_4V88_402
- Geometric discrepancy: 0.1271
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
7QIZ|1|S2|U|315
7QIZ|1|S2|A|316
7QIZ|1|S2|U|317
7QIZ|1|S2|C|318
7QIZ|1|S2|A|319
7QIZ|1|S2|A|320
*
7QIZ|1|S2|U|352
7QIZ|1|S2|G|353
7QIZ|1|S2|G|354
7QIZ|1|S2|U|355
7QIZ|1|S2|G|356
7QIZ|1|S2|A|357
7QIZ|1|S2|C|358
7QIZ|1|S2|G|359
Current chains
- Chain S2
- 18S
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain CA
- 40S body ribosomal protein uS12
- Chain y
- 40S ribosomal protein S8
- Chain z
- Ribosomal_S17_N domain-containing protein
Coloring options: