IL_7QIZ_193

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CCAA(PSU)C*GGAG

Length

10 nucleotides

Bulged bases

7QIZ|1|S2|G|463

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_193 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.2614

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

7QIZ|1|S2|C|447
7QIZ|1|S2|C|448
7QIZ|1|S2|A|449
7QIZ|1|S2|A|450
7QIZ|1|S2|PSU|451
7QIZ|1|S2|C|452
*
7QIZ|1|S2|G|462
7QIZ|1|S2|G|463
7QIZ|1|S2|A|464
7QIZ|1|S2|G|465

Current chains

Chain S2

18S

Nearby chains

Chain GA

40S body ribosomal protein uS4

Chain KA

40S ribosomal protein S24

Chain w

40S ribosomal protein S4