IL_7QIZ_200
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GUGCCAG*CGG(OMU)AA(PSU)UC
- Length
- 16 nucleotides
- Bulged bases
- 7QIZ|1|S2|A|582, 7QIZ|1|S2|U|585
- QA status
- Modified nucleotides: OMU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIZ_200 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1054
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
7QIZ|1|S2|G|565
7QIZ|1|S2|U|566
7QIZ|1|S2|G|567
7QIZ|1|S2|C|568
7QIZ|1|S2|C|569
7QIZ|1|S2|A|570
7QIZ|1|S2|G|571
*
7QIZ|1|S2|C|578
7QIZ|1|S2|G|579
7QIZ|1|S2|G|580
7QIZ|1|S2|OMU|581
7QIZ|1|S2|A|582
7QIZ|1|S2|A|583
7QIZ|1|S2|PSU|584
7QIZ|1|S2|U|585
7QIZ|1|S2|C|586
Current chains
- Chain S2
- 18S
Nearby chains
- Chain CA
- 40S body ribosomal protein uS12
- Chain MA
- 40S ribosomal protein S30
- Chain NA
- KH type-2 domain-containing protein
Coloring options: