IL_7QIZ_204
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIZ_204 not in the Motif Atlas
- Geometric match to IL_4V88_418
- Geometric discrepancy: 0.0809
- The information below is about IL_4V88_418
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
7QIZ|1|S2|C|630
7QIZ|1|S2|G|631
7QIZ|1|S2|U|632
7QIZ|1|S2|A|633
7QIZ|1|S2|G|634
*
7QIZ|1|S2|U|971
7QIZ|1|S2|C|972
7QIZ|1|S2|A|973
7QIZ|1|S2|A|974
7QIZ|1|S2|G|975
Current chains
- Chain S2
- 18S
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain CA
- 40S body ribosomal protein uS12
- Chain HA
- 30S ribosomal protein S15, chloroplastic
- Chain JA
- 40S ribosomal protein S15a-1
- Chain z
- Ribosomal_S17_N domain-containing protein
Coloring options: