IL_7QIZ_225

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

7QIZ|1|S2|C|1161, 7QIZ|1|S2|C|1162

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_225 not in the Motif Atlas

Geometric match to IL_4V88_443

Geometric discrepancy: 0.0874

The information below is about IL_4V88_443

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.9

Basepair signature

cWW-cWS-cHS-L-cWW-tWH

Number of instances in this motif group

15

Unit IDs

7QIZ|1|S2|A|1160
7QIZ|1|S2|C|1161
7QIZ|1|S2|C|1162
7QIZ|1|S2|A|1163
*
7QIZ|1|S2|U|1623
7QIZ|1|S2|C|1624
7QIZ|1|S2|C|1625
7QIZ|1|S2|C|1626
7QIZ|1|S2|U|1627

Current chains

Chain S2

18S

Nearby chains

Chain RA

40S ribosomal protein uS9

Chain WA

40S ribosomal protein eS28

Chain aA

tRNA_1