IL_7QIZ_242
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GCUUAUAGC*GUAAUC
- Length
- 15 nucleotides
- Bulged bases
- 7QIZ|1|S2|U|1498, 7QIZ|1|S2|A|1523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIZ_242 not in the Motif Atlas
- Geometric match to IL_5J7L_055
- Geometric discrepancy: 0.171
- The information below is about IL_5J7L_055
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.2
- Basepair signature
- cWW-cSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7QIZ|1|S2|G|1493
7QIZ|1|S2|C|1494
7QIZ|1|S2|U|1495
7QIZ|1|S2|U|1496
7QIZ|1|S2|A|1497
7QIZ|1|S2|U|1498
7QIZ|1|S2|A|1499
7QIZ|1|S2|G|1500
7QIZ|1|S2|C|1501
*
7QIZ|1|S2|G|1520
7QIZ|1|S2|U|1521
7QIZ|1|S2|A|1522
7QIZ|1|S2|A|1523
7QIZ|1|S2|U|1524
7QIZ|1|S2|C|1525
Current chains
- Chain S2
- 18S
Nearby chains
- Chain NA
- KH type-2 domain-containing protein
- Chain RA
- 40S ribosomal protein uS9
- Chain UA
- 40S ribosomal protein eS19
- Chain VA
- Ribosomal_S10 domain-containing protein
- Chain XA
- 40S ribosomal protein uS14
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