IL_7QIZ_270

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

AACAA(OMU)G*C(OMU)A(PSU)

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_270 not in the Motif Atlas

Homologous match to IL_8C3A_080

Geometric discrepancy: 0.2196

The information below is about IL_8C3A_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.3

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

7QIZ|1|2|A|1889
7QIZ|1|2|A|1890
7QIZ|1|2|C|1891
7QIZ|1|2|A|1892
7QIZ|1|2|A|1893
7QIZ|1|2|OMU|1894
7QIZ|1|2|G|1895
*
7QIZ|1|2|C|2349
7QIZ|1|2|OMU|2350
7QIZ|1|2|A|2351
7QIZ|1|2|PSU|2352

Current chains

Chain 2

25S rRNA

Nearby chains

Chain E

Ribosomal protein L3

Chain R

50S ribosomal protein L22, chloroplastic

Chain f

60S ribosomal protein eL31